Q-Chem 5.1 User’s Manual
Table of Contents
1 Introduction
1.1 About This Manual
1.2
Q-Chem
, Inc.
1.3
Q-Chem
Features
1.4 Citing
Q-Chem
2 Installation, Customization, and Execution
2.1 Installation Requirements
2.2 Installing
Q-Chem
2.3
Q-Chem
Auxiliary files (
$QCAUX
)
2.4
Q-Chem
Run-time Environment Variables
2.5 User Account Adjustments
2.6 Further Customization:
.qchemrc
and
preferences
Files
2.7 Running
Q-Chem
2.8 Parallel
Q-Chem
Jobs
2.9
IQmol
Installation Requirements
2.10 Testing and Exploring
Q-Chem
3
Q-Chem
Inputs
3.1
IQmol
3.2 General Form
3.3 Molecular Coordinate Input (
$molecule
)
3.4 Job Specification: The
$rem
Input Section
3.5 Additional Input Sections
3.6 Multiple Jobs in a Single File:
Q-Chem
Batch Jobs
3.7
Q-Chem
Output File
4 Self-Consistent Field Ground-State Methods
4.1 Overview
4.2 Theoretical Background
4.3 Basic SCF Job Control
4.4 SCF Initial Guess
4.5 Converging SCF Calculations
4.6 Large Molecules and Linear Scaling Methods
4.7 Dual-Basis Self-Consistent Field Calculations
4.8 Hartree-Fock and Density-Functional Perturbative Corrections
4.9 Unconventional SCF Calculations
4.10 Ground State Method Summary
5 Density Functional Theory
5.1 Introduction
5.2 Kohn-Sham Density Functional Theory
5.3 Overview of Available Functionals
5.4 Basic DFT Job Control
5.5 DFT Numerical Quadrature
5.6 Range-Separated Hybrid Density Functionals
5.7 DFT Methods for van der Waals Interactions
5.8 Empirical Corrections for Basis Set Superposition Error
5.9 Double-Hybrid Density Functional Theory
5.10 Asymptotically Corrected Exchange-Correlation Potentials
5.11 Derivative Discontinuity Restoration
5.12 Thermally-Assisted-Occupation Density Functional Theory (TAO-DFT)
5.13 Methods Based on “Constrained” DFT
6 Wave Function-Based Correlation Methods
6.1 Introduction
6.2 Treatment and the Definition of Core Electrons
6.3 Møller-Plesset Perturbation Theory
6.4 Exact MP2 Methods
6.5 Local MP2 Methods
6.6 Auxiliary Basis (Resolution of the Identity) MP2 Methods
6.7 Attenuated MP2
6.8 Coupled-Cluster Methods
6.9 Non-iterative Corrections to Coupled Cluster Energies
6.10 Coupled Cluster Active Space Methods
6.11 Frozen Natural Orbitals in CCD, CCSD, OD, QCCD, and QCISD Calculations
6.12 Non-Hartree-Fock Orbitals in Correlated Calculations
6.13 Analytic Gradients and Properties for Coupled-Cluster Methods
6.14 Memory Options and Parallelization of Coupled-Cluster Calculations
6.15 Simplified Coupled-Cluster Methods Based on a Perfect-Pairing Active Space
6.16 Geminal Models
7 Open-Shell and Excited-State Methods
7.1 General Excited-State Features
7.2 Uncorrelated Wave Function Methods
7.3 Time-Dependent Density Functional Theory (TDDFT)
7.4 Maximum Overlap Method (MOM) for SCF Excited States
7.5 Restricted Open-Shell Kohn-Sham Method for
-SCF Calculations of Excited States
7.6 Correlated Excited State Methods: The CIS(D) Family
7.7 Coupled-Cluster Excited-State and Open-Shell Methods
7.8 Correlated Excited State Methods: The ADC(
) Family
7.9 Restricted Active Space Spin-Flip (RAS-SF) and Configuration Interaction (RAS-CI)
7.10 Core Ionization Energies and Core-Excited States
7.11 Real-Time SCF Methods (RT-TDDFT, RT-HF, OSCF2)
7.12 Visualization of Excited States
8 Basis Sets
8.1 Introduction
8.2 Built-In Basis Sets
8.3 Basis Set Symbolic Representation
8.4 User-Defined Basis Sets (
$basis
)
8.5 Mixed Basis Sets
8.6 Dual Basis Sets
8.7 Auxiliary Basis Sets for RI (Density Fitting)
8.8 Ghost Atoms and Basis Set Superposition Error
9 Effective Core Potentials
9.1 Introduction
9.2 ECP Fitting
9.3 Built-In ECPs
9.4 User-Defined ECPs
9.5 ECPs and Electron Correlation
9.6 Forces and Vibrational Frequencies with ECPs
9.7 A Brief Guide to
Q-Chem
’s Built-In ECPs
10 Exploring Potential Energy Surfaces: Critical Points and Molecular Dynamics
10.1 Equilibrium Geometries and Transition-State Structures
10.2 Improved Algorithms for Transition-Structure Optimization
10.3 Constrained Optimization
10.4 Potential Energy Scans
10.5 Intrinsic Reaction Coordinate
10.6 Nonadiabatic Couplings and Optimization of Minimum-Energy Crossing Points
10.7
Ab Initio
Molecular Dynamics
10.8
Ab initio
Path Integrals
11 Molecular Properties and Analysis
11.1 Introduction
11.2 Wave Function Analysis
11.3 Interface to the NBO Package
11.4 Orbital Localization
11.5 Visualizing and Plotting Orbitals, Densities, and Other Volumetric Data
11.6 Spin and Charge Densities at the Nuclei
11.7 Atoms in Molecules
11.8 Distributed Multipole Analysis
11.9 Intracules
11.10 Harmonic Vibrational Analysis
11.11 Anharmonic Vibrational Frequencies
11.12 Linear-Scaling Computation of Electric Properties
11.13 NMR and Other Magnetic Properties
11.14 Finite-Field Calculation of (Hyper)Polarizabilities
11.15 General Response Theory
11.16 Electronic Couplings for Electron- and Energy Transfer
11.17 Population of Effectively Unpaired Electrons
11.18 Molecular Junctions
12 Molecules in Complex Environments: Solvent Models, QM/MM and QM/EFP Features, Density Embedding
12.1 Introduction
12.2 Chemical Solvent Models
12.3 Stand-Alone QM/MM Calculations
12.4 Q-CHEM/CHARMM Interface
12.5 Effective Fragment Potential Method
12.6 Projector-Based Density Embedding
12.7 Frozen-Density Embedding Theory based methods
13 Fragment-Based Methods
13.1 Introduction
13.2 Specifying Fragments in the
$molecule
Section
13.3 FRAGMO Initial Guess for SCF Methods
13.4 Locally-Projected SCF Methods
13.5 The First-Generation ALMO-EDA and Charge-Transfer Analysis (CTA)
13.6 Job Control for Locally-Projected SCF Methods
13.7 The Second-Generation ALMO-EDA Method
13.8 The MP2 ALMO-EDA Method
13.9 The Adiabatic ALMO-EDA Method
13.10 The Explicit Polarization (XPol) Method
13.11 Symmetry-Adapted Perturbation Theory (SAPT)
13.12 The XPol+SAPT (XSAPT) Method
13.13 Energy Decomposition Analysis based on SAPT/cDFT
13.14 The Many-Body Expansion Method
13.15
Ab Initio
Frenkel Davydov Exciton Model (AIFDEM)
13.16 TDDFT for Molecular Interactions
13.17 The ALMO-CIS and ALMO-CIS+CT methods
A Geometry Optimization with
Q-Chem
A.1 Introduction
A.2 Theoretical Background
A.3 Eigenvector-Following (EF) Algorithm
A.4 Delocalized Internal Coordinates
A.5 Constrained Optimization
A.6 Delocalized Internal Coordinates
A.7 GDIIS
B
AOInts
B.1 Introduction
B.2 Historical Perspective
B.3
AOInts
: Calculating ERIs with
Q-Chem
B.4 Shell-Pair Data
B.5 Shell-Quartets and Integral Classes
B.6 Fundamental ERI
B.7 Angular Momentum Problem
B.8 Contraction Problem
B.9 Quadratic Scaling
B.10 Algorithm Selection
B.11 More Efficient Hartree–Fock Gradient and Hessian Evaluations
B.12 User-Controllable Variables
C
Q-Chem
Quick Reference
C.1
Q-Chem
Text Input Summary
C.2 Geometry Optimization with General Constraints
C.3
$rem
Variable List
C.4 Alphabetical Listing of
$rem
Variables
D References and Further Reading