EFP_COORD_XYZ
EFP_COORD_XYZ
Use coordinates of three atoms instead of Euler angles to specify
position and orientation of the fragments
TYPE:
LOGICAL
DEFAULT:
FALSE
OPTIONS:
TRUE FALSE
RECOMMENDATION:
None
EFP_DIRECT_POLARIZATION_DRIVER
EFP_DIRECT_POLARIZATION_DRIVER
Use direct solver for EFP polarization
TYPE:
LOGICAL
DEFAULT:
FALSE
OPTIONS:
TRUE FALSE
RECOMMENDATION:
Direct polarization solver provides stable convergence of induced dipoles which may otherwise become problematic in case of closely lying or highly polar or charged fragments. The computational cost of direct polarization versus iterative polarization becomes higher for systems containing more than 10000 polarizable points.
EFP_ENABLE_LINKS
EFP_ENABLE_LINKS
Enable fragment links in EFP region
TYPE:
LOGICAL
DEFAULT:
FALSE
OPTIONS:
TRUE FALSE
RECOMMENDATION:
None
EFP
EFP
Specifies that EFP calculation is requested
TYPE:
LOGICAL
DEFAULT:
FALSE
OPTIONS:
TRUE FALSE
RECOMMENDATION:
The keyword should be present if excited state calculation is requested
EFP_FRAGMENTS_ONLY
EFP_FRAGMENTS_ONLY
Specifies whether there is a QM part
TYPE:
LOGICAL
DEFAULT:
FALSE
QM part is present
OPTIONS:
TRUE
Only MM part is present: all fragments are treated by EFP
FALSE
QM part is present: do QM/MM EFP calculation
RECOMMENDATION:
None
EFP_INPUT
EFP_INPUT
Specifies the format of EFP input
TYPE:
LOGICAL
DEFAULT:
FALSE
Dummy atom (e.g., He) in $molecule section should be present
OPTIONS:
TRUE
A format without dummy atom in $molecule section
FALSE
A format with dummy atom in $molecule section
RECOMMENDATION:
None
FEFP_EFP
FEFP_EFP
Specifies that fEFP_EFP calculation is requested to compute the total
interaction energies between a ligand (the last fragment in the
$efp_fragments section) and the protein (represented by fEFP)
TYPE:
STRING
DEFAULT:
OFF
OPTIONS:
OFF
disables fEFP
LA
enables fEFP with the Link Atom (HLA or CLA) scheme (only
electrostatics and polarization)
MFCC
enables fEFP with MFCC (only
electrostatics)
RECOMMENDATION:
The keyword should be invoked if EFP/fEFP is requested (interaction
energy calculations). This keyword has to be employed with
EFP_FRAGMENT_ONLY = TRUE. To switch on/off
electrostatics or polarzation interactions, the usual EFP controls are
employed.
FEFP_QM
FEFP_QM
Specifies that fEFP_QM calculation is requested to perform a
QM/fEFPcompute computation. The fEFP part is a fractionated macromolecule.
TYPE:
STRING
DEFAULT:
OFF
OPTIONS:
OFF
disables fEFP_QM and performs a QM/EFP calculation
LA
enables fEFP_QM with the Link Atom scheme
RECOMMENDATION:
The keyword should be invoked if QM/fEFP is requested. This keyword has
to be employed with efp_fragment_only false. Only electrostatics is
available.
EFP_ELEC
EFP_ELEC
Controls fragment-fragment electrostatics in EFP
TYPE:
LOGICAL
DEFAULT:
TRUE
OPTIONS:
TRUE
switch on electrostatics
FALSE
switch off electrostatics
RECOMMENDATION:
None
EFP_POL
EFP_POL
Controls fragment-fragment polarization in EFP
TYPE:
LOGICAL
DEFAULT:
TRUE
OPTIONS:
TRUE
switch on polarization
FALSE
switch off polarization
RECOMMENDATION:
None
EFP_DISP
EFP_DISP
Controls fragment-fragment dispersion in EFP
TYPE:
LOGICAL
DEFAULT:
TRUE
OPTIONS:
TRUE
switch on dispersion
FALSE
switch off dispersion
RECOMMENDATION:
None
EFP_EXREP
EFP_EXREP
Controls fragment-fragment exchange repulsion in EFP
TYPE:
LOGICAL
DEFAULT:
TRUE
OPTIONS:
TRUE
switch on exchange repulsion
FALSE
switch off exchange repulsion
RECOMMENDATION:
None
EFP_QM_ELEC
EFP_QM_ELEC
Controls QM-EFP electrostatics
TYPE:
LOGICAL
DEFAULT:
TRUE
OPTIONS:
TRUE
switch on QM-EFP electrostatics
FALSE
switch off QM-EFP electrostatics
RECOMMENDATION:
None
EFP_QM_POL
EFP_QM_POL
Controls QM-EFP polarization
TYPE:
LOGICAL
DEFAULT:
TRUE
OPTIONS:
TRUE
switch on QM-EFP polarization
FALSE
switch off QM-EFP polarization
RECOMMENDATION:
None
EFP_QM_DISP
EFP_QM_DISP
Controls QM-EFP dispersion
TYPE:
LOGICAL
DEFAULT:
FALSE
OPTIONS:
TRUE
switch on QM-EFP dispersion
FALSE
switch off QM-EFP dispersion
RECOMMENDATION:
None
EFP_QM_EXREP
EFP_QM_EXREP
Controls QM-EFP exchange-repulsion
TYPE:
LOGICAL
DEFAULT:
FALSE
OPTIONS:
TRUE
switch on QM-EFP exchange-repulsion
FALSE
switch off QM-EFP exchange-repulsion
RECOMMENDATION:
None
EFP_ELEC_DAMP
EFP_ELEC_DAMP
Controls fragment-fragment electrostatic screening in EFP
TYPE:
INTEGER
DEFAULT:
2
OPTIONS:
0
switch off electrostatic screening
1
use overlap-based damping correction
2
use exponential damping correction if SCREEN2 screening parameters are provided in the EFP potential
RECOMMENDATION:
Overlap-based damping is recommended
EFP_DISP_DAMP
EFP_DISP_DAMP
Controls fragment-fragment dispersion screening in EFP
TYPE:
INTEGER
DEFAULT:
2
OPTIONS:
0
switch off dispersion screening
1
use Tang-Toennies screening, with fixed parameter
2
use overlap-based damping
RECOMMENDATION:
None
EFP_POL_DAMP
EFP_POL_DAMP
Controls fragment-fragment polarization screening in EFP
TYPE:
INTEGER
DEFAULT:
1
OPTIONS:
0
switch off polarization screening
1
use Tang-Toennies screening
RECOMMENDATION:
None
EFP_QM_ELEC_DAMP
EFP_QM_ELEC_DAMP
Controls QM-EFP electrostatics screening in EFP
TYPE:
INTEGER
DEFAULT:
0
OPTIONS:
0
switch off electrostatic screening
1
use QM-EFP electrostatic damping if SCREEN screening parameters are provided in the EFP potential
RECOMMENDATION:
None
EFP_PAIRWISE
EFP_PAIRWISE
Controls QM-EFP pairwise fragment energy decomposition analysis
TYPE:
INTEGER
DEFAULT:
0
OPTIONS:
0
energy decomposition is turned off
1
energy decomposition is turned on
RECOMMENDATION:
None
EFP_ORDER
EFP_ORDER
Controls QM-EFP pairwise fragment energy decomposition analysis
TYPE:
INTEGER
DEFAULT:
0
OPTIONS:
1
the first step of energy decomposition is performed
2
the second step of energy decomposition is performed
RECOMMENDATION:
The EFP_PAIRWISE keyword should be turned on to activate the energy decomposition analysis.